Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMQ_1983Conserved hypothetical protein. (172 aa)    
Predicted Functional Partners:
BMQ_0344
ATP-dependent RNA helicase.
  
    0.879
BMQ_1984
Glutathione peroxidase family protein; Belongs to the glutathione peroxidase family.
       0.772
fhs
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
       0.678
BMQ_1985
Metal-dependent phosphohydrolase.
       0.667
yfmR
Putative ABC transporter, ATP-binding protein.
       0.667
BMQ_1987
Conserved hypothetical protein.
       0.625
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.577
BMQ_0073
Conserved hypothetical protein.
  
     0.555
BMQ_1363
GTPase.
  
     0.534
BMQ_1989
Conserved hypothetical protein; Belongs to the UPF0403 family.
       0.478
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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