Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BMQ_2136Oxidoreductase. (495 aa)    
Predicted Functional Partners:
BMQ_0656
Phytoene synthase.
 
  
 0.859
BMQ_2951
Acyltransferase.
 
   
 0.753
BMQ_2952
Conserved hypothetical protein.
 
   
 0.746
BMQ_2161
Conserved hypothetical protein.
  
     0.718
BMQ_2950
Glycosyl transferase domain protein, group 2 family protein.
 
   
 0.659
BMQ_3872
Squalene/phytoene synthase.
 
  
 0.657
BMQ_4356
Transcriptional regulator, MerR family.
 
  
 0.543
sodC
Copper/zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
    0.512
BMQ_4008
Conserved hypothetical protein.
  
     0.504
BMQ_2919
Conserved hypothetical protein.
  
     0.501
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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