Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMQ_2147Conserved hypothetical protein. (241 aa)    
Predicted Functional Partners:
BMQ_2149
Oxidoreductase.
 
   
 0.943
BMQ_2148
NADH-dependent dehydrogenase.
 
   
 0.925
BMQ_2150
Xylose isomerase domain protein TIM barrel.
 
     0.922
BMQ_0933
Xylose isomerase domain protein TIM barrel.
 
     0.865
BMQ_1777
Xylose isomerase domain protein TIM barrel.
 
     0.785
BMQ_2146
Periplasmic binding proteins and sugar binding domain of the LacI family, putative.
       0.746
melA
Alpha-galactosidase.
  
     0.529
yesM
Two-component sensor histidine kinase.
       0.478
BMQ_1775
Oxidoreductase family protein.
 
   
 0.472
BMQ_2224
Transcriptional regulator, LacI family.
       0.470
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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