STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMQ_2149Oxidoreductase. (334 aa)    
Predicted Functional Partners:
BMQ_2150
Xylose isomerase domain protein TIM barrel.
  
 0.974
BMQ_2147
Conserved hypothetical protein.
 
    0.911
BMQ_1777
Xylose isomerase domain protein TIM barrel.
  
 0.853
BMQ_2148
NADH-dependent dehydrogenase.
 
    
0.830
BMQ_0933
Xylose isomerase domain protein TIM barrel.
 
  
 0.811
BMQ_1774
Xylose isomerase domain protein TIM barrel.
 
  
 0.660
iolB-2
5-deoxy-glucuronate isomerase.
 
  
 0.587
iolD
Myo-inositol catabolism protein IolD; Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG).
  
  
 0.548
iolD-2
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG).
  
  
 0.548
iolB
5-deoxy-glucuronate isomerase.
  
  
 0.531
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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