STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
splBSpore photoproduct lyase. (342 aa)    
Predicted Functional Partners:
BMQ_2225
Transcriptional regulator.
 
  
 0.962
uvdE-2
UV damage endonuclease UvdE; Component in a DNA repair pathway. Removal of UV-light damaged nucleotides. Recognizes pyrimidine dimers and cleave a phosphodiester bond immediately 5' to the lesion.
 
   
 0.482
BMQ_2227
Hypothetical protein.
       0.473
BMQ_3189
Manganese catalase.
  
     0.472
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination.
  
   
 0.465
ytaF
Putative sporulation protein YtaF; Probably functions as a manganese efflux pump.
  
     0.458
uvdE
UV damage endonuclease UvdE.
 
   
 0.449
BMQ_3240
Protein cotJC.
  
     0.429
spoVAEA
Stage V sporulation protein AE.
  
     0.415
BMQ_4946
Protein of unknown function (DUF378).
  
     0.415
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.