Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMQ_2500Transporter, major facilitator family. (405 aa)    
Predicted Functional Partners:
BMQ_2501
NADPH-dependent FMN reductase family protein.
       0.811
BMQ_2775
Transporter, major facilitator family.
  
     0.549
yhcY
Two-component sensor histidine kinase.
       0.530
yhcZ
Two-component response regulator.
       0.517
BMQ_1161
Transcriptional regulator.
  
     0.514
BMQ_2499
SNF2 helicase family protein.
       0.492
mtnE
Transaminase.
  
  
 0.489
BMQ_2498
2,3-diketo-5-methylthio-1-phosphopentane phosphatase.
       0.469
BMQ_3333
Acetyltransferase, GNAT family.
  
   
 0.467
BMQ_4011
Hypothetical protein.
  
     0.457
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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