Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bdbDThiol-disulfide oxidoreductase BdbD. (235 aa)    
Predicted Functional Partners:
bdbC
Thiol-disulfide oxidoreductase BdbC; Required for disulfide bond formation in some proteins. Belongs to the DsbB family. BdbC subfamily.
 
 
 0.986
BMQ_3167
Peptidase, M56 domain protein.
       0.750
BMQ_3168
Conserved hypothetical protein.
       0.724
dprA
DNA protecting protein DprA.
  
 
 
 0.562
BMQ_4082
Cytochrome C biogenesis protein transmembrane region.
     
 0.552
BMQ_2009
DNA polymerase I.
 
   
 0.529
coiA
Competence protein CoiA.
   
  
 0.521
BMQ_3169
Conserved hypothetical protein.
       0.474
BMQ_2556
AhpC/TSA family protein.
  
  
 0.441
cadA-2
Cadmium-translocating P-type ATPase.
 
 
 
 0.421
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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