Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BMQ_3833 | ylxY | BMQ_3833 | BMQ_4144 | Glycosyl transferase, family 2. | Probable sporulation protein, polysaccharide deacetylase family. | 0.437 |
mlpA | pnp | BMQ_4143 | BMQ_4145 | Zinc protease; Belongs to the peptidase M16 family. | Polynucleotide phosphorylase (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.642 |
mlpA | ylxY | BMQ_4143 | BMQ_4144 | Zinc protease; Belongs to the peptidase M16 family. | Probable sporulation protein, polysaccharide deacetylase family. | 0.803 |
mlpA | ymxH | BMQ_4143 | BMQ_4142 | Zinc protease; Belongs to the peptidase M16 family. | Sporulation protein YmxH. | 0.616 |
pnp | mlpA | BMQ_4145 | BMQ_4143 | Polynucleotide phosphorylase (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Zinc protease; Belongs to the peptidase M16 family. | 0.642 |
pnp | ylxY | BMQ_4145 | BMQ_4144 | Polynucleotide phosphorylase (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Probable sporulation protein, polysaccharide deacetylase family. | 0.545 |
pnp | ymxH | BMQ_4145 | BMQ_4142 | Polynucleotide phosphorylase (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Sporulation protein YmxH. | 0.403 |
ylxY | BMQ_3833 | BMQ_4144 | BMQ_3833 | Probable sporulation protein, polysaccharide deacetylase family. | Glycosyl transferase, family 2. | 0.437 |
ylxY | mlpA | BMQ_4144 | BMQ_4143 | Probable sporulation protein, polysaccharide deacetylase family. | Zinc protease; Belongs to the peptidase M16 family. | 0.803 |
ylxY | pnp | BMQ_4144 | BMQ_4145 | Probable sporulation protein, polysaccharide deacetylase family. | Polynucleotide phosphorylase (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.545 |
ylxY | ymxH | BMQ_4144 | BMQ_4142 | Probable sporulation protein, polysaccharide deacetylase family. | Sporulation protein YmxH. | 0.649 |
ymxH | mlpA | BMQ_4142 | BMQ_4143 | Sporulation protein YmxH. | Zinc protease; Belongs to the peptidase M16 family. | 0.616 |
ymxH | pnp | BMQ_4142 | BMQ_4145 | Sporulation protein YmxH. | Polynucleotide phosphorylase (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.403 |
ymxH | ylxY | BMQ_4142 | BMQ_4144 | Sporulation protein YmxH. | Probable sporulation protein, polysaccharide deacetylase family. | 0.649 |