Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cwlJ | sleB-2 | BMQ_3234 | BMQ_2145 | Cell wall hydrolase CwlJ. | Spore cortex-lytic enzyme. | 0.524 |
| cwlJ | sleB-3 | BMQ_3234 | BMQ_2391 | Cell wall hydrolase CwlJ. | Spore cortex-lytic enzyme. | 0.578 |
| cwlJ | sleB-5 | BMQ_3234 | BMQ_4350 | Cell wall hydrolase CwlJ. | Spore cortex-lytic enzyme. | 0.780 |
| cwlJ | ypeB | BMQ_3234 | BMQ_4349 | Cell wall hydrolase CwlJ. | Germination protein YpeB. | 0.766 |
| gerM | spoIIE | BMQ_4705 | BMQ_0086 | Germination protein GerM. | Stage II sporulation protein E. | 0.738 |
| gerM | spoIIGA | BMQ_4705 | BMQ_4271 | Germination protein GerM. | sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR (By similarity). | 0.677 |
| gerM | spoIIIAC | BMQ_4705 | BMQ_4468 | Germination protein GerM. | Stage III sporulation protein AC. | 0.641 |
| gerM | spoIIM | BMQ_4705 | BMQ_4400 | Germination protein GerM. | Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane. | 0.685 |
| gerM | ypeB | BMQ_4705 | BMQ_4349 | Germination protein GerM. | Germination protein YpeB. | 0.714 |
| sleB | spoIIGA | BMQ_1284 | BMQ_4271 | Spore cortex-lytic enzyme. | sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR (By similarity). | 0.528 |
| sleB | ypeB | BMQ_1284 | BMQ_4349 | Spore cortex-lytic enzyme. | Germination protein YpeB. | 0.807 |
| sleB-2 | cwlJ | BMQ_2145 | BMQ_3234 | Spore cortex-lytic enzyme. | Cell wall hydrolase CwlJ. | 0.524 |
| sleB-2 | sleB-5 | BMQ_2145 | BMQ_4350 | Spore cortex-lytic enzyme. | Spore cortex-lytic enzyme. | 0.406 |
| sleB-2 | spoIIGA | BMQ_2145 | BMQ_4271 | Spore cortex-lytic enzyme. | sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR (By similarity). | 0.530 |
| sleB-2 | ypeB | BMQ_2145 | BMQ_4349 | Spore cortex-lytic enzyme. | Germination protein YpeB. | 0.740 |
| sleB-3 | cwlJ | BMQ_2391 | BMQ_3234 | Spore cortex-lytic enzyme. | Cell wall hydrolase CwlJ. | 0.578 |
| sleB-3 | spoIIGA | BMQ_2391 | BMQ_4271 | Spore cortex-lytic enzyme. | sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR (By similarity). | 0.492 |
| sleB-3 | ypeB | BMQ_2391 | BMQ_4349 | Spore cortex-lytic enzyme. | Germination protein YpeB. | 0.726 |
| sleB-5 | cwlJ | BMQ_4350 | BMQ_3234 | Spore cortex-lytic enzyme. | Cell wall hydrolase CwlJ. | 0.780 |
| sleB-5 | sleB-2 | BMQ_4350 | BMQ_2145 | Spore cortex-lytic enzyme. | Spore cortex-lytic enzyme. | 0.406 |
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