Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83753.1 | AEF85244.1 | TREPR_0064 | TREPR_1632 | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | 0.788 |
| AEF83753.1 | AEF86142.1 | TREPR_0064 | TREPR_0066 | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | Phage shock protein A, PspA; Identified by match to protein family HMM PF04012. | 0.639 |
| AEF83753.1 | AEF86506.1 | TREPR_0064 | TREPR_0071 | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | Putative neutral metalloprotease. | 0.474 |
| AEF83753.1 | AEF86837.1 | TREPR_0064 | TREPR_0065 | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | Hypothetical protein; Identified by glimmer; putative. | 0.746 |
| AEF83753.1 | trmJ | TREPR_0064 | TREPR_0062 | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.475 |
| AEF84076.1 | AEF86837.1 | TREPR_3148 | TREPR_0065 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.507 |
| AEF85244.1 | AEF83753.1 | TREPR_1632 | TREPR_0064 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | 0.788 |
| AEF85244.1 | AEF86837.1 | TREPR_1632 | TREPR_0065 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Hypothetical protein; Identified by glimmer; putative. | 0.429 |
| AEF86142.1 | AEF83753.1 | TREPR_0066 | TREPR_0064 | Phage shock protein A, PspA; Identified by match to protein family HMM PF04012. | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | 0.639 |
| AEF86142.1 | AEF86506.1 | TREPR_0066 | TREPR_0071 | Phage shock protein A, PspA; Identified by match to protein family HMM PF04012. | Putative neutral metalloprotease. | 0.431 |
| AEF86142.1 | AEF86837.1 | TREPR_0066 | TREPR_0065 | Phage shock protein A, PspA; Identified by match to protein family HMM PF04012. | Hypothetical protein; Identified by glimmer; putative. | 0.894 |
| AEF86506.1 | AEF83753.1 | TREPR_0071 | TREPR_0064 | Putative neutral metalloprotease. | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | 0.474 |
| AEF86506.1 | AEF86142.1 | TREPR_0071 | TREPR_0066 | Putative neutral metalloprotease. | Phage shock protein A, PspA; Identified by match to protein family HMM PF04012. | 0.431 |
| AEF86506.1 | AEF86837.1 | TREPR_0071 | TREPR_0065 | Putative neutral metalloprotease. | Hypothetical protein; Identified by glimmer; putative. | 0.561 |
| AEF86837.1 | AEF83753.1 | TREPR_0065 | TREPR_0064 | Hypothetical protein; Identified by glimmer; putative. | Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. | 0.746 |
| AEF86837.1 | AEF84076.1 | TREPR_0065 | TREPR_3148 | Hypothetical protein; Identified by glimmer; putative. | Conserved hypothetical protein. | 0.507 |
| AEF86837.1 | AEF85244.1 | TREPR_0065 | TREPR_1632 | Hypothetical protein; Identified by glimmer; putative. | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | 0.429 |
| AEF86837.1 | AEF86142.1 | TREPR_0065 | TREPR_0066 | Hypothetical protein; Identified by glimmer; putative. | Phage shock protein A, PspA; Identified by match to protein family HMM PF04012. | 0.894 |
| AEF86837.1 | AEF86506.1 | TREPR_0065 | TREPR_0071 | Hypothetical protein; Identified by glimmer; putative. | Putative neutral metalloprotease. | 0.561 |
| AEF86837.1 | trmJ | TREPR_0065 | TREPR_0062 | Hypothetical protein; Identified by glimmer; putative. | RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.417 |
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