STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF86140.1Conserved hypothetical protein; Identified by match to protein family HMM PF02922. (252 aa)    
Predicted Functional Partners:
AEF86875.1
Tetratricopeptide repeat domain protein.
 
     0.898
AEF83912.1
22.5 kDa protein.
  
 
   0.814
AEF83563.1
Conserved hypothetical protein.
  
 
   0.812
AEF84981.1
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
 
   0.812
cdsA_1
Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.
 
     0.805
AEF85932.1
Identified by match to protein family HMM PF00691.
  
 
 
 0.784
greA
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
 
 
   0.782
flgL
Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550.
  
 
   0.778
AEF85390.1
Conserved hypothetical protein.
  
    0.775
AEF83657.1
Conserved hypothetical protein.
  
     0.774
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.