Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83705.1 | AEF85906.1 | TREPR_0394 | TREPR_0119 | Glyceraldehyde-3-phosphate dehydrogenase, type II; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01546. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.479 |
| AEF83705.1 | cmk | TREPR_0394 | TREPR_2339 | Glyceraldehyde-3-phosphate dehydrogenase, type II; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01546. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.621 |
| AEF83908.1 | AEF85906.1 | TREPR_1247 | TREPR_0119 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.438 |
| AEF83908.1 | cmk | TREPR_1247 | TREPR_2339 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.401 |
| AEF85417.1 | AEF85906.1 | TREPR_0118 | TREPR_0119 | Putative substrate binding protein; Identified by match to protein family HMM PF01547. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.757 |
| AEF85417.1 | aroK | TREPR_0118 | TREPR_0117 | Putative substrate binding protein; Identified by match to protein family HMM PF01547. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.458 |
| AEF85906.1 | AEF83705.1 | TREPR_0119 | TREPR_0394 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Glyceraldehyde-3-phosphate dehydrogenase, type II; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01546. | 0.479 |
| AEF85906.1 | AEF83908.1 | TREPR_0119 | TREPR_1247 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.438 |
| AEF85906.1 | AEF85417.1 | TREPR_0119 | TREPR_0118 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Putative substrate binding protein; Identified by match to protein family HMM PF01547. | 0.757 |
| AEF85906.1 | AEF86276.1 | TREPR_0119 | TREPR_3572 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.474 |
| AEF85906.1 | AEF86443.1 | TREPR_0119 | TREPR_1569 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.600 |
| AEF85906.1 | aroK | TREPR_0119 | TREPR_0117 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.465 |
| AEF85906.1 | cmk | TREPR_0119 | TREPR_2339 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.401 |
| AEF86276.1 | AEF85906.1 | TREPR_3572 | TREPR_0119 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.474 |
| AEF86276.1 | cmk | TREPR_3572 | TREPR_2339 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.401 |
| AEF86443.1 | AEF85906.1 | TREPR_1569 | TREPR_0119 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.600 |
| AEF86443.1 | cmk | TREPR_1569 | TREPR_2339 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.401 |
| aroK | AEF85417.1 | TREPR_0117 | TREPR_0118 | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | Putative substrate binding protein; Identified by match to protein family HMM PF01547. | 0.458 |
| aroK | AEF85906.1 | TREPR_0117 | TREPR_0119 | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.465 |
| cmk | AEF83705.1 | TREPR_2339 | TREPR_0394 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Glyceraldehyde-3-phosphate dehydrogenase, type II; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01546. | 0.621 |
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