Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF84965.1 | AEF84984.1 | TREPR_0290 | TREPR_0291 | Conserved hypothetical protein; Identified by match to protein family HMM TIGR02436. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | 0.723 |
| AEF84965.1 | AEF86554.1 | TREPR_0290 | TREPR_0292 | Conserved hypothetical protein; Identified by match to protein family HMM TIGR02436. | Conserved hypothetical protein. | 0.633 |
| AEF84965.1 | rsmI | TREPR_0290 | TREPR_0293 | Conserved hypothetical protein; Identified by match to protein family HMM TIGR02436. | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.520 |
| AEF84984.1 | AEF84965.1 | TREPR_0291 | TREPR_0290 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | Conserved hypothetical protein; Identified by match to protein family HMM TIGR02436. | 0.723 |
| AEF84984.1 | AEF86554.1 | TREPR_0291 | TREPR_0292 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | Conserved hypothetical protein. | 0.727 |
| AEF84984.1 | rplC | TREPR_0291 | TREPR_1477 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.732 |
| AEF84984.1 | rplM | TREPR_0291 | TREPR_2981 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.734 |
| AEF84984.1 | rplQ | TREPR_0291 | TREPR_1502 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | 50S ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.727 |
| AEF84984.1 | rplU | TREPR_0291 | TREPR_3448 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.727 |
| AEF84984.1 | rplX | TREPR_0291 | TREPR_1488 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.723 |
| AEF84984.1 | rsfS | TREPR_0291 | TREPR_3454 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.739 |
| AEF84984.1 | rsmI | TREPR_0291 | TREPR_0293 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.722 |
| AEF84984.1 | trmE | TREPR_0291 | TREPR_1080 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.734 |
| AEF86554.1 | AEF84965.1 | TREPR_0292 | TREPR_0290 | Conserved hypothetical protein. | Conserved hypothetical protein; Identified by match to protein family HMM TIGR02436. | 0.633 |
| AEF86554.1 | AEF84984.1 | TREPR_0292 | TREPR_0291 | Conserved hypothetical protein. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | 0.727 |
| AEF86554.1 | rsmI | TREPR_0292 | TREPR_0293 | Conserved hypothetical protein. | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.706 |
| rplC | AEF84984.1 | TREPR_1477 | TREPR_0291 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588. | 0.732 |
| rplC | rplM | TREPR_1477 | TREPR_2981 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplQ | TREPR_1477 | TREPR_1502 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.996 |
| rplC | rplU | TREPR_1477 | TREPR_3448 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
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