Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83538.1 | AEF86806.1 | TREPR_1750 | TREPR_1746 | Hypothetical protein; Identified by glimmer; putative. | Putative 4Fe-4S ferredoxin, RnfC; Identified by match to protein family HMM PF00037. | 0.912 |
| AEF83538.1 | rnfB | TREPR_1750 | TREPR_0305 | Hypothetical protein; Identified by glimmer; putative. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.969 |
| AEF83538.1 | rnfC | TREPR_1750 | TREPR_0310 | Hypothetical protein; Identified by glimmer; putative. | Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.628 |
| AEF83538.1 | rnfD | TREPR_1750 | TREPR_0309 | Hypothetical protein; Identified by glimmer; putative. | RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.647 |
| AEF83538.1 | rnfE | TREPR_1750 | TREPR_0307 | Hypothetical protein; Identified by glimmer; putative. | Ion-translocating oxidoreductase complex subunit E; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.892 |
| AEF83538.1 | rnfG | TREPR_1750 | TREPR_0308 | Hypothetical protein; Identified by glimmer; putative. | Electron transport complex, rnfabcdGe type, g subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.784 |
| AEF84058.1 | AEF86118.1 | TREPR_0303 | TREPR_0304 | Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | Conserved hypothetical protein. | 0.664 |
| AEF84058.1 | AEF86283.1 | TREPR_0303 | TREPR_0306 | Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | Na+-translocating NADH-quinone reductase, E subunit; Identified by match to protein family HMM PF02508; Belongs to the NqrDE/RnfAE family. | 0.642 |
| AEF84058.1 | rnfB | TREPR_0303 | TREPR_0305 | Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.664 |
| AEF84058.1 | rnfC | TREPR_0303 | TREPR_0310 | Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.625 |
| AEF84058.1 | rnfD | TREPR_0303 | TREPR_0309 | Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.642 |
| AEF84058.1 | rnfE | TREPR_0303 | TREPR_0307 | Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | Ion-translocating oxidoreductase complex subunit E; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.642 |
| AEF84058.1 | rnfG | TREPR_0303 | TREPR_0308 | Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | Electron transport complex, rnfabcdGe type, g subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.642 |
| AEF84867.1 | AEF86283.1 | TREPR_0974 | TREPR_0306 | ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | Na+-translocating NADH-quinone reductase, E subunit; Identified by match to protein family HMM PF02508; Belongs to the NqrDE/RnfAE family. | 0.722 |
| AEF84867.1 | AEF86806.1 | TREPR_0974 | TREPR_1746 | ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | Putative 4Fe-4S ferredoxin, RnfC; Identified by match to protein family HMM PF00037. | 0.648 |
| AEF84867.1 | rnfB | TREPR_0974 | TREPR_0305 | ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.721 |
| AEF84867.1 | rnfC | TREPR_0974 | TREPR_0310 | ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.682 |
| AEF84867.1 | rnfD | TREPR_0974 | TREPR_0309 | ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.775 |
| AEF84867.1 | rnfE | TREPR_0974 | TREPR_0307 | ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | Ion-translocating oxidoreductase complex subunit E; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.748 |
| AEF84867.1 | rnfG | TREPR_0974 | TREPR_0308 | ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | Electron transport complex, rnfabcdGe type, g subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.757 |
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