Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEF85173.1Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (366 aa)    
Predicted Functional Partners:
wxcM_1
Bifunctional acetyl transferase/isomerase; Identified by match to protein family HMM PF05523; overlaps another CDS with the same product name.
  
 0.950
AEF85735.1
Lipopolysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
  
 0.904
AEF86428.1
Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025.
  
  
 0.855
wxcM_2
Bifunctional acetyl transferase/isomerase; Identified by match to protein family HMM PF05523; overlaps another CDS with the same product name.
 
  
 0.820
AEF85801.1
VI polysaccharide biosynthesis protein VipA/tviB; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.670
AEF86343.1
Putative glycosyltransferase.
 
    0.658
AEF84828.1
Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.635
AEF86997.1
Pyrophosphatase PpaX.
       0.612
AEF84676.1
Transketolase; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.
  
    0.591
AEF86387.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
  
  
 0.563
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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