STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF84577.1Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00534. (367 aa)    
Predicted Functional Partners:
AEF86750.1
Putative lipopolysaccharide biosynthesis; Identified by match to protein family HMM PF00534.
 
     0.885
AEF85801.1
VI polysaccharide biosynthesis protein VipA/tviB; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.849
AEF85424.1
VI polysaccharide biosynthesis protein VipB/tviC; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.
 
    0.847
AEF83600.1
Putative membrane protein.
       0.773
AEF86439.1
Conserved hypothetical protein.
       0.741
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
 
  
 0.710
AEF85523.1
LPS biosynthesis glycosyltransferase-like protein; Identified by match to protein family HMM PF00534.
  
     0.700
AEF85735.1
Lipopolysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
  
  
 0.621
AEF86428.1
Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025.
 
  
 0.598
AEF86343.1
Putative glycosyltransferase.
       0.523
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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