STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF86630.1Identified by match to protein family HMM PF00561. (257 aa)    
Predicted Functional Partners:
AEF86466.1
UDP-N-acetylmuramyl pentapeptide synthase; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245.
 
   
 0.949
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
   
 0.921
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.803
acd
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
  
 
 0.756
AEF85622.1
Identified by match to protein family HMM PF00881.
  
  
 0.619
AEF85228.1
Putative peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.
  
 
 0.511
AEF86548.1
NADH oxidase (noxase); Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.
  
 
 0.421
AEF84645.1
2-oxoglutarate decarboxylase; Identified by match to protein family HMM PF02776.
  
  
 0.408
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.