Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF85288.1 | AEF86235.1 | TREPR_2532 | TREPR_2945 | Conserved domain protein. | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | 0.952 |
| AEF85288.1 | AEF86604.1 | TREPR_2532 | TREPR_2608 | Conserved domain protein. | Probable ATP-dependent helicase YoaA. | 0.945 |
| AEF85288.1 | AEF86975.1 | TREPR_2532 | TREPR_0410 | Conserved domain protein. | Putative helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851. | 0.897 |
| AEF85288.1 | rpoA | TREPR_2532 | TREPR_1501 | Conserved domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
| AEF85288.1 | rpoB | TREPR_2532 | TREPR_0930 | Conserved domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.990 |
| AEF85288.1 | rpoC | TREPR_2532 | TREPR_0931 | Conserved domain protein. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
| AEF86014.1 | AEF86975.1 | TREPR_0411 | TREPR_0410 | DNA modification methylase. | Putative helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851. | 0.908 |
| AEF86045.1 | AEF86975.1 | TREPR_3490 | TREPR_0410 | Identified by match to protein family HMM PF00485. | Putative helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851. | 0.777 |
| AEF86045.1 | rpoC | TREPR_3490 | TREPR_0931 | Identified by match to protein family HMM PF00485. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.508 |
| AEF86235.1 | AEF85288.1 | TREPR_2945 | TREPR_2532 | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | Conserved domain protein. | 0.952 |
| AEF86235.1 | AEF86604.1 | TREPR_2945 | TREPR_2608 | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | Probable ATP-dependent helicase YoaA. | 0.968 |
| AEF86235.1 | AEF86975.1 | TREPR_2945 | TREPR_0410 | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | Putative helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851. | 0.776 |
| AEF86235.1 | dnaN | TREPR_2945 | TREPR_0275 | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.591 |
| AEF86235.1 | polA | TREPR_2945 | TREPR_3060 | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.954 |
| AEF86235.1 | rpoA | TREPR_2945 | TREPR_1501 | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.952 |
| AEF86235.1 | rpoB | TREPR_2945 | TREPR_0930 | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.954 |
| AEF86235.1 | rpoC | TREPR_2945 | TREPR_0931 | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.788 |
| AEF86604.1 | AEF85288.1 | TREPR_2608 | TREPR_2532 | Probable ATP-dependent helicase YoaA. | Conserved domain protein. | 0.945 |
| AEF86604.1 | AEF86235.1 | TREPR_2608 | TREPR_2945 | Probable ATP-dependent helicase YoaA. | DNA or RNA helicase of superfamily II; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851. | 0.968 |
| AEF86604.1 | AEF86975.1 | TREPR_2608 | TREPR_0410 | Probable ATP-dependent helicase YoaA. | Putative helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851. | 0.681 |
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