STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF84638.1Putative uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (327 aa)    
Predicted Functional Partners:
AEF85381.1
uroporphyrinogen-III synthase/methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.
  
 
 0.931
AEF83655.1
Hypothetical protein; Identified by glimmer; putative; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 
0.925
AEF86807.1
Uroporphyrinogen decarboxylase (URO-D) superfamily; Identified by match to protein family HMM PF01208; Belongs to the uroporphyrinogen decarboxylase family.
  
  
  0.914
AEF83883.1
Uroporphyrinogen decarboxylase; Identified by match to protein family HMM PF01208; Belongs to the uroporphyrinogen decarboxylase family.
     
  0.900
AEF85608.1
Putative methyltransferase CmuC; Belongs to the uroporphyrinogen decarboxylase family.
     
  0.900
AEF83881.1
Putative acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase subfamily; Identified by match to protein family HMM PF03417.
 
     0.777
AEF85868.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005.
  
    0.776
AEF86642.1
Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
       0.773
AEF84278.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
       0.752
AEF85260.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
       0.752
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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