STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF84278.1Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528. (279 aa)    
Predicted Functional Partners:
AEF85260.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
    0.964
AEF84734.1
Extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496.
 
   0.917
AEF86642.1
Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
    0.885
AEF85868.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005.
  
 0.862
AEF85418.1
Probable peptide ABC transporter permease protein y4tP; Identified by match to protein family HMM PF00528.
    0.848
AEF85934.1
Probable peptide ABC transporter permease protein y4tP; Identified by match to protein family HMM PF00528.
    0.848
AEF86901.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
    0.848
AEF83849.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
    0.848
AEF84203.1
Oligopeptide transport system permease protein OppB; Identified by match to protein family HMM PF00528.
    0.847
AEF83901.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
    0.847
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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