Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83581.1 | AEF85568.1 | TREPR_0486 | TREPR_0484 | Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464. | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | 0.559 |
| AEF84379.1 | AEF85568.1 | TREPR_0731 | TREPR_0484 | Nuclease sbcCD subunit C. | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | 0.427 |
| AEF84379.1 | polA | TREPR_0731 | TREPR_3060 | Nuclease sbcCD subunit C. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.906 |
| AEF85160.1 | AEF85568.1 | TREPR_1925 | TREPR_0484 | Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150. | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | 0.615 |
| AEF85160.1 | AEF86582.1 | TREPR_1925 | TREPR_1924 | Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150. | Peptidase, M22 family; Identified by match to protein family HMM PF00814. | 0.999 |
| AEF85160.1 | metG | TREPR_1925 | TREPR_1795 | Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150. | methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.474 |
| AEF85160.1 | miaA | TREPR_1925 | TREPR_2531 | Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150. | tRNA isopentenyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.476 |
| AEF85160.1 | polA | TREPR_1925 | TREPR_3060 | Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.472 |
| AEF85160.1 | tsaD | TREPR_1925 | TREPR_0165 | Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150. | Probable O-sialoglycoprotein endopeptidase (Glycoprotease); Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.922 |
| AEF85568.1 | AEF83581.1 | TREPR_0484 | TREPR_0486 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464. | 0.559 |
| AEF85568.1 | AEF84379.1 | TREPR_0484 | TREPR_0731 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | Nuclease sbcCD subunit C. | 0.427 |
| AEF85568.1 | AEF85160.1 | TREPR_0484 | TREPR_1925 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150. | 0.615 |
| AEF85568.1 | AEF86582.1 | TREPR_0484 | TREPR_1924 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | Peptidase, M22 family; Identified by match to protein family HMM PF00814. | 0.693 |
| AEF85568.1 | hemK | TREPR_0484 | TREPR_1505 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. | 0.482 |
| AEF85568.1 | metG | TREPR_0484 | TREPR_1795 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.460 |
| AEF85568.1 | miaA | TREPR_0484 | TREPR_2531 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | tRNA isopentenyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.430 |
| AEF85568.1 | polA | TREPR_0484 | TREPR_3060 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.436 |
| AEF85568.1 | trmB | TREPR_0484 | TREPR_2641 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.620 |
| AEF85568.1 | tsaD | TREPR_0484 | TREPR_0165 | Identified by match to protein family HMM PF01300; Belongs to the SUA5 family. | Probable O-sialoglycoprotein endopeptidase (Glycoprotease); Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.695 |
| AEF86582.1 | AEF85160.1 | TREPR_1924 | TREPR_1925 | Peptidase, M22 family; Identified by match to protein family HMM PF00814. | Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150. | 0.999 |
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