Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83635.1 | AEF84655.1 | TREPR_3297 | TREPR_3758 | Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | 0.942 |
| AEF83635.1 | AEF85522.1 | TREPR_3297 | TREPR_0218 | Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | GMP synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888. | 0.605 |
| AEF83635.1 | AEF86465.1 | TREPR_3297 | TREPR_0509 | Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Hypothetical protein; Identified by glimmer; putative. | 0.437 |
| AEF83635.1 | nrdD | TREPR_3297 | TREPR_0510 | Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF03477; match to protein family HMM TIGR02487. | 0.424 |
| AEF83635.1 | nrdG | TREPR_3297 | TREPR_0511 | Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. | 0.566 |
| AEF83874.1 | AEF84655.1 | TREPR_3759 | TREPR_3758 | Conserved hypothetical protein. | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | 0.929 |
| AEF83874.1 | nrdG | TREPR_3759 | TREPR_0511 | Conserved hypothetical protein. | Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. | 0.853 |
| AEF84655.1 | AEF83635.1 | TREPR_3758 | TREPR_3297 | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.942 |
| AEF84655.1 | AEF83874.1 | TREPR_3758 | TREPR_3759 | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | Conserved hypothetical protein. | 0.929 |
| AEF84655.1 | nrdD | TREPR_3758 | TREPR_0510 | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF03477; match to protein family HMM TIGR02487. | 0.457 |
| AEF84655.1 | nrdG | TREPR_3758 | TREPR_0511 | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. | 0.585 |
| AEF85412.1 | nrdD | TREPR_0513 | TREPR_0510 | NAD-dependent deacetylase; Identified by match to protein family HMM PF02146. | Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF03477; match to protein family HMM TIGR02487. | 0.533 |
| AEF85412.1 | nrdG | TREPR_0513 | TREPR_0511 | NAD-dependent deacetylase; Identified by match to protein family HMM PF02146. | Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. | 0.569 |
| AEF85412.1 | queH | TREPR_0513 | TREPR_0512 | NAD-dependent deacetylase; Identified by match to protein family HMM PF02146. | Uncharacterized conserved protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). | 0.773 |
| AEF85522.1 | AEF83635.1 | TREPR_0218 | TREPR_3297 | GMP synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888. | Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.605 |
| AEF85522.1 | AEF85802.1 | TREPR_0218 | TREPR_3243 | GMP synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888. | Putative rubredoxin; Identified by match to protein family HMM PF00301. | 0.467 |
| AEF85522.1 | nrdG | TREPR_0218 | TREPR_0511 | GMP synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888. | Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. | 0.490 |
| AEF85724.1 | AEF86465.1 | TREPR_0508 | TREPR_0509 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| AEF85724.1 | nrdD | TREPR_0508 | TREPR_0510 | Hypothetical protein; Identified by glimmer; putative. | Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF03477; match to protein family HMM TIGR02487. | 0.499 |
| AEF85724.1 | nrdG | TREPR_0508 | TREPR_0511 | Hypothetical protein; Identified by glimmer; putative. | Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. | 0.499 |
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