Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83928.1 | AEF84022.1 | TREPR_0599 | TREPR_0600 | Conserved domain protein. | Putative lipoprotein. | 0.514 |
| AEF83928.1 | rnhA | TREPR_0599 | TREPR_0598 | Conserved domain protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.773 |
| AEF84022.1 | AEF83928.1 | TREPR_0600 | TREPR_0599 | Putative lipoprotein. | Conserved domain protein. | 0.514 |
| AEF84022.1 | rnhA | TREPR_0600 | TREPR_0598 | Putative lipoprotein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.514 |
| AEF84191.1 | rnhA | TREPR_2323 | TREPR_0598 | Putative zinc ribbon domain family; Identified by match to protein family HMM PF02591. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.687 |
| AEF84327.1 | AEF85319.1 | TREPR_0125 | TREPR_2684 | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | 0.920 |
| AEF84327.1 | AEF86652.1 | TREPR_0125 | TREPR_0887 | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.902 |
| AEF84327.1 | polA | TREPR_0125 | TREPR_3060 | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.503 |
| AEF84327.1 | rnhA | TREPR_0125 | TREPR_0598 | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.608 |
| AEF84327.1 | topA | TREPR_0125 | TREPR_2565 | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.966 |
| AEF85319.1 | AEF84327.1 | TREPR_2684 | TREPR_0125 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.920 |
| AEF85319.1 | AEF86652.1 | TREPR_2684 | TREPR_0887 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.914 |
| AEF85319.1 | polA | TREPR_2684 | TREPR_3060 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.592 |
| AEF85319.1 | rnhA | TREPR_2684 | TREPR_0598 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.608 |
| AEF85319.1 | topA | TREPR_2684 | TREPR_2565 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.966 |
| AEF86652.1 | AEF84327.1 | TREPR_0887 | TREPR_0125 | Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.902 |
| AEF86652.1 | AEF85319.1 | TREPR_0887 | TREPR_2684 | Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | 0.914 |
| AEF86652.1 | polA | TREPR_0887 | TREPR_3060 | Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.503 |
| AEF86652.1 | rnhA | TREPR_0887 | TREPR_0598 | Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.608 |
| AEF86652.1 | topA | TREPR_0887 | TREPR_2565 | Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.966 |
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