STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF85513.1Iron-sulfur cluster-binding protein, Rieske family; Identified by match to protein family HMM PF01106. (74 aa)    
Predicted Functional Partners:
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
  
 0.876
AEF84598.1
IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324.
  
 
 0.788
AEF85092.1
Radical SAM N- domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM PF08497.
       0.774
AEF85229.1
Cysteine desulfurase; Identified by match to protein family HMM PF00266.
 
 
 0.698
iscS
Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.
  
 
 0.655
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.652
ilvD
Dihydroxy-acid dehydratase; Identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110; Belongs to the IlvD/Edd family.
  
 
 0.637
AEF86845.1
Dihydroxy-acid dehydratase (DAD); Identified by match to protein family HMM PF00920; Belongs to the IlvD/Edd family.
  
 
 0.637
ndk-2
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
   0.615
AEF86649.1
Oligoendopeptidase, PepF/M3 family; Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR02290.
       0.596
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.