Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83543.1 | AEF83557.1 | TREPR_0637 | TREPR_0633 | Bile acid:sodium symporter; Identified by match to protein family HMM PF01758. | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | 0.504 |
| AEF83543.1 | AEF85694.1 | TREPR_0637 | TREPR_0635 | Bile acid:sodium symporter; Identified by match to protein family HMM PF01758. | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | 0.520 |
| AEF83543.1 | AEF86509.1 | TREPR_0637 | TREPR_0636 | Bile acid:sodium symporter; Identified by match to protein family HMM PF01758. | Putative Fe-S oxidoreductase; Identified by match to protein family HMM PF04055. | 0.520 |
| AEF83543.1 | clpB | TREPR_0637 | TREPR_0638 | Bile acid:sodium symporter; Identified by match to protein family HMM PF01758. | ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.551 |
| AEF83557.1 | AEF83543.1 | TREPR_0633 | TREPR_0637 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | Bile acid:sodium symporter; Identified by match to protein family HMM PF01758. | 0.504 |
| AEF83557.1 | AEF84426.1 | TREPR_0633 | TREPR_3110 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | Conserved hypothetical protein; Identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464. | 0.465 |
| AEF83557.1 | AEF84969.1 | TREPR_0633 | TREPR_2787 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | Fibronectin type III domain protein; Identified by match to protein family HMM PF00041. | 0.402 |
| AEF83557.1 | AEF85322.1 | TREPR_0633 | TREPR_2995 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | NB-ARC domain protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF00656. | 0.419 |
| AEF83557.1 | AEF85694.1 | TREPR_0633 | TREPR_0635 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | 0.750 |
| AEF83557.1 | AEF86163.1 | TREPR_0633 | TREPR_0622 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | Appr-1-p processing domain protein; Identified by match to protein family HMM PF01661. | 0.404 |
| AEF83557.1 | AEF86509.1 | TREPR_0633 | TREPR_0636 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | Putative Fe-S oxidoreductase; Identified by match to protein family HMM PF04055. | 0.747 |
| AEF83557.1 | AEF86563.1 | TREPR_0633 | TREPR_0485 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | Cytoplasm protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.582 |
| AEF83557.1 | clpB | TREPR_0633 | TREPR_0638 | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.459 |
| AEF84426.1 | AEF83557.1 | TREPR_3110 | TREPR_0633 | Conserved hypothetical protein; Identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464. | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | 0.465 |
| AEF84426.1 | AEF85322.1 | TREPR_3110 | TREPR_2995 | Conserved hypothetical protein; Identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464. | NB-ARC domain protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF00656. | 0.654 |
| AEF84426.1 | AEF85694.1 | TREPR_3110 | TREPR_0635 | Conserved hypothetical protein; Identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464. | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | 0.481 |
| AEF84426.1 | AEF86163.1 | TREPR_3110 | TREPR_0622 | Conserved hypothetical protein; Identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464. | Appr-1-p processing domain protein; Identified by match to protein family HMM PF01661. | 0.757 |
| AEF84969.1 | AEF83557.1 | TREPR_2787 | TREPR_0633 | Fibronectin type III domain protein; Identified by match to protein family HMM PF00041. | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | 0.402 |
| AEF84969.1 | AEF85694.1 | TREPR_2787 | TREPR_0635 | Fibronectin type III domain protein; Identified by match to protein family HMM PF00041. | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | 0.402 |
| AEF85322.1 | AEF83557.1 | TREPR_2995 | TREPR_0633 | NB-ARC domain protein; Identified by match to protein family HMM PF00400; match to protein family HMM PF00656. | Glycosyltransferase family 1, candidate beta-glycosyltransferase; Identified by match to protein family HMM PF03033. | 0.419 |
page 1 of 3