Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83852.1 | AEF84822.1 | TREPR_0654 | TREPR_0655 | Hypothetical protein; Identified by glimmer; putative. | Sugar kinase, fggy family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782. | 0.538 |
| AEF83852.1 | AEF85701.1 | TREPR_0654 | TREPR_0656 | Hypothetical protein; Identified by glimmer; putative. | 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659. | 0.509 |
| AEF83852.1 | AEF85870.1 | TREPR_0654 | TREPR_0652 | Hypothetical protein; Identified by glimmer; putative. | Type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI). | 0.402 |
| AEF83852.1 | AEF87000.1 | TREPR_0654 | TREPR_0653 | Hypothetical protein; Identified by glimmer; putative. | Modification methylase PstI (Adenine-specificmethyltransferase PstI) (M.PstI); Identified by match to protein family HMM PF07669. | 0.572 |
| AEF84822.1 | AEF83852.1 | TREPR_0655 | TREPR_0654 | Sugar kinase, fggy family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782. | Hypothetical protein; Identified by glimmer; putative. | 0.538 |
| AEF84822.1 | AEF85701.1 | TREPR_0655 | TREPR_0656 | Sugar kinase, fggy family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782. | 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659. | 0.796 |
| AEF84822.1 | AEF87000.1 | TREPR_0655 | TREPR_0653 | Sugar kinase, fggy family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782. | Modification methylase PstI (Adenine-specificmethyltransferase PstI) (M.PstI); Identified by match to protein family HMM PF07669. | 0.418 |
| AEF85601.1 | AEF85870.1 | TREPR_0651 | TREPR_0652 | Transcriptional Regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. | Type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI). | 0.631 |
| AEF85601.1 | AEF86577.1 | TREPR_0651 | TREPR_0650 | Transcriptional Regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. | Identified by match to protein family HMM PF00691. | 0.525 |
| AEF85601.1 | AEF87000.1 | TREPR_0651 | TREPR_0653 | Transcriptional Regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. | Modification methylase PstI (Adenine-specificmethyltransferase PstI) (M.PstI); Identified by match to protein family HMM PF07669. | 0.438 |
| AEF85701.1 | AEF83852.1 | TREPR_0656 | TREPR_0654 | 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659. | Hypothetical protein; Identified by glimmer; putative. | 0.509 |
| AEF85701.1 | AEF84822.1 | TREPR_0656 | TREPR_0655 | 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659. | Sugar kinase, fggy family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782. | 0.796 |
| AEF85701.1 | AEF87000.1 | TREPR_0656 | TREPR_0653 | 3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659. | Modification methylase PstI (Adenine-specificmethyltransferase PstI) (M.PstI); Identified by match to protein family HMM PF07669. | 0.403 |
| AEF85870.1 | AEF83852.1 | TREPR_0652 | TREPR_0654 | Type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI). | Hypothetical protein; Identified by glimmer; putative. | 0.402 |
| AEF85870.1 | AEF85601.1 | TREPR_0652 | TREPR_0651 | Type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI). | Transcriptional Regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. | 0.631 |
| AEF85870.1 | AEF86577.1 | TREPR_0652 | TREPR_0650 | Type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI). | Identified by match to protein family HMM PF00691. | 0.437 |
| AEF85870.1 | AEF87000.1 | TREPR_0652 | TREPR_0653 | Type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI). | Modification methylase PstI (Adenine-specificmethyltransferase PstI) (M.PstI); Identified by match to protein family HMM PF07669. | 0.987 |
| AEF85870.1 | proC | TREPR_0652 | TREPR_0155 | Type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI). | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.625 |
| AEF85870.1 | rsmI | TREPR_0652 | TREPR_0293 | Type II restriction enzyme BsuBI (Endonuclease BsuBI)(R.BsuBI). | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.608 |
| AEF86577.1 | AEF85601.1 | TREPR_0650 | TREPR_0651 | Identified by match to protein family HMM PF00691. | Transcriptional Regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. | 0.525 |
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