STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF84482.1Conserved hypothetical protein. (235 aa)    
Predicted Functional Partners:
AEF85121.1
Metal dependent phosphohydrolase; Identified by match to protein family HMM PF01966.
       0.782
AEF85088.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.752
AEF84501.1
Tetratricopeptide repeat domain protein.
  
     0.718
AEF85303.1
Conserved hypothetical protein.
  
     0.700
AEF85133.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.638
AEF86875.1
Tetratricopeptide repeat domain protein.
  
     0.633
AEF84251.1
Identified by match to protein family HMM PF00149.
  
     0.626
AEF83606.1
Putative cell division protein FtsQ; Essential cell division protein.
  
     0.614
greA
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
  
     0.606
AEF84546.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.593
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.