Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83590.1 | AEF84570.1 | TREPR_0715 | TREPR_0714 | Conserved hypothetical protein; Identified by match to protein family HMM PF02151; match to protein family HMM PF02577. | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | 0.661 |
| AEF83590.1 | AEF86106.1 | TREPR_0715 | TREPR_0716 | Conserved hypothetical protein; Identified by match to protein family HMM PF02151; match to protein family HMM PF02577. | Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | 0.790 |
| AEF83590.1 | rrmJ | TREPR_0715 | TREPR_0717 | Conserved hypothetical protein; Identified by match to protein family HMM PF02151; match to protein family HMM PF02577. | Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.549 |
| AEF84097.1 | AEF84147.1 | TREPR_2572 | TREPR_1583 | Stage V sporulation protein E; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | 0.650 |
| AEF84097.1 | AEF84570.1 | TREPR_2572 | TREPR_0714 | Stage V sporulation protein E; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | 0.496 |
| AEF84097.1 | ftsZ | TREPR_2572 | TREPR_2569 | Stage V sporulation protein E; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.854 |
| AEF84097.1 | mltG | TREPR_2572 | TREPR_2319 | Stage V sporulation protein E; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.463 |
| AEF84097.1 | murC | TREPR_2572 | TREPR_2414 | Stage V sporulation protein E; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.918 |
| AEF84147.1 | AEF84097.1 | TREPR_1583 | TREPR_2572 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Stage V sporulation protein E; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | 0.650 |
| AEF84147.1 | AEF84570.1 | TREPR_1583 | TREPR_0714 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | 0.654 |
| AEF84147.1 | ftsZ | TREPR_1583 | TREPR_2569 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.513 |
| AEF84147.1 | mltG | TREPR_1583 | TREPR_2319 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.651 |
| AEF84147.1 | murC | TREPR_1583 | TREPR_2414 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.739 |
| AEF84570.1 | AEF83590.1 | TREPR_0714 | TREPR_0715 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Conserved hypothetical protein; Identified by match to protein family HMM PF02151; match to protein family HMM PF02577. | 0.661 |
| AEF84570.1 | AEF84097.1 | TREPR_0714 | TREPR_2572 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Stage V sporulation protein E; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | 0.496 |
| AEF84570.1 | AEF84147.1 | TREPR_0714 | TREPR_1583 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | 0.654 |
| AEF84570.1 | AEF84769.1 | TREPR_0714 | TREPR_2855 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Flagellar motor switch protein FliY; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.701 |
| AEF84570.1 | AEF86106.1 | TREPR_0714 | TREPR_0716 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | 0.655 |
| AEF84570.1 | ftsZ | TREPR_0714 | TREPR_2569 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.434 |
| AEF84570.1 | mltG | TREPR_0714 | TREPR_2319 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.420 |
page 1 of 3