Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEF87020.1Branched-chain amino acid transport; Identified by match to protein family HMM PF05437. (119 aa)    
Predicted Functional Partners:
AEF83605.1
Branched-chain amino acid transport protein AzlC; Identified by match to protein family HMM PF03591.
 
  
 0.950
AEF86659.1
Identified by match to protein family HMM PF02470.
       0.596
AEF84139.1
Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.596
AEF85865.1
ABC transporter permease protein; Identified by match to protein family HMM PF02405.
       0.596
AEF84938.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296.
       0.563
AEF83837.1
Glyoxalase domain protein; Identified by match to protein family HMM PF00903.
       0.530
AEF86542.1
Tetratricopeptide repeat domain protein.
       0.530
AEF84213.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01584.
  
     0.513
AEF83947.1
Conserved domain protein; Identified by match to protein family HMM PF01371.
       0.481
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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