Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEF84559.1Hypothetical protein; Identified by glimmer; putative. (287 aa)    
Predicted Functional Partners:
AEF86507.1
Methyltransferase type 12; Identified by match to protein family HMM PF02353; match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM PF08242.
   
   0.820
AEF85607.1
Hypothetical protein; Identified by glimmer; putative.
       0.816
AEF84930.1
Cell wall hydrolase/autolysin.
  
 
 0.719
AEF84763.1
N-acetylmuramoyl-L-alanine amidase, family 3; Identified by match to protein family HMM PF01520.
  
 
 0.719
AEF84723.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 0.579
AEF84206.1
DNA polymerase domain protein; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758.
   
   0.422
AEF86765.1
Putative tetratricopeptide TPR_2 repeat protein.
   
   0.410
AEF84814.1
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF07719.
   
   0.410
AEF84021.1
Putative tetratricopeptide TPR_2 repeat protein.
   
   0.410
AEF86478.1
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
   
   0.410
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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