AEF85171.1 protein (Treponema primitia ZAS2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AEF85171.1

Type I restriction modification system M subunit; Identified by match to protein family HMM PF02384. (488 aa)

Predicted Functional Partners:

AEF86822.1

0.977

AEF84320.1

0.953

AEF85818.1

0.931

AEF83737.1

0.894

AEF85830.1

0.773

AEF85570.1

0.773

AEF84595.1

0.773

AEF84230.1

0.738

AEF84099.1

0.729

AEF85850.1

0.725

Your Current Organism:

Treponema primitia ZAS2

NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEF83737.1	AEF84099.1	TREPR_3629	TREPR_3693	Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851.	Dna methylase-type I restriction-modification system.	0.529
AEF83737.1	AEF84230.1	TREPR_3629	TREPR_2736	Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851.	Restriction modification system DNA specificity domain protein; Identified by match to protein family HMM PF01420.	0.494
AEF83737.1	AEF84320.1	TREPR_3629	TREPR_0818	Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851.	Type I site-specific deoxyribonuclease; Identified by match to protein family HMM PF01420.	0.825
AEF83737.1	AEF85171.1	TREPR_3629	TREPR_0824	Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851.	Type I restriction modification system M subunit; Identified by match to protein family HMM PF02384.	0.894
AEF83737.1	AEF86822.1	TREPR_3629	TREPR_0820	Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851.	Type I restriction-modification system S subunit; Identified by match to protein family HMM PF01420.	0.838
AEF84099.1	AEF83737.1	TREPR_3693	TREPR_3629	Dna methylase-type I restriction-modification system.	Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851.	0.529
AEF84099.1	AEF85171.1	TREPR_3693	TREPR_0824	Dna methylase-type I restriction-modification system.	Type I restriction modification system M subunit; Identified by match to protein family HMM PF02384.	0.729
AEF84099.1	AEF85818.1	TREPR_3693	TREPR_0817	Dna methylase-type I restriction-modification system.	Type I restriction-modification system R subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851.	0.517
AEF84099.1	AEF85850.1	TREPR_3693	TREPR_2280	Dna methylase-type I restriction-modification system.	HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.593
AEF84230.1	AEF83737.1	TREPR_2736	TREPR_3629	Restriction modification system DNA specificity domain protein; Identified by match to protein family HMM PF01420.	Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851.	0.494
AEF84230.1	AEF85171.1	TREPR_2736	TREPR_0824	Restriction modification system DNA specificity domain protein; Identified by match to protein family HMM PF01420.	Type I restriction modification system M subunit; Identified by match to protein family HMM PF02384.	0.738
AEF84230.1	AEF85818.1	TREPR_2736	TREPR_0817	Restriction modification system DNA specificity domain protein; Identified by match to protein family HMM PF01420.	Type I restriction-modification system R subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851.	0.429
AEF84230.1	AEF85850.1	TREPR_2736	TREPR_2280	Restriction modification system DNA specificity domain protein; Identified by match to protein family HMM PF01420.	HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.903
AEF84320.1	AEF83737.1	TREPR_0818	TREPR_3629	Type I site-specific deoxyribonuclease; Identified by match to protein family HMM PF01420.	Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851.	0.825
AEF84320.1	AEF84595.1	TREPR_0818	TREPR_0823	Type I site-specific deoxyribonuclease; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein.	0.540
AEF84320.1	AEF85171.1	TREPR_0818	TREPR_0824	Type I site-specific deoxyribonuclease; Identified by match to protein family HMM PF01420.	Type I restriction modification system M subunit; Identified by match to protein family HMM PF02384.	0.953
AEF84320.1	AEF85570.1	TREPR_0818	TREPR_0822	Type I site-specific deoxyribonuclease; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein.	0.543
AEF84320.1	AEF85818.1	TREPR_0818	TREPR_0817	Type I site-specific deoxyribonuclease; Identified by match to protein family HMM PF01420.	Type I restriction-modification system R subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851.	0.920
AEF84320.1	AEF85830.1	TREPR_0818	TREPR_0821	Type I site-specific deoxyribonuclease; Identified by match to protein family HMM PF01420.	Hypothetical protein; Identified by glimmer; putative.	0.540
AEF84320.1	AEF85850.1	TREPR_0818	TREPR_2280	Type I site-specific deoxyribonuclease; Identified by match to protein family HMM PF01420.	HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.593

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About