Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEF83718.1Conserved hypothetical protein; Identified by match to protein family HMM TIGR03299. (307 aa)    
Predicted Functional Partners:
AEF84703.1
Sugar-phospahte nucleotidyltransferase.
       0.526
AEF85589.1
Conserved hypothetical protein.
   
    0.514
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.498
AEF85145.1
Conserved hypothetical protein.
 
   
 0.487
AEF85471.1
DNA repair protein RadC; Identified by match to protein family HMM PF04002.
       0.479
AEF84851.1
Prephenate dehydrogenase; Identified by match to protein family HMM PF02153.
  
    0.449
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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