Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF83673.1 | AEF83946.1 | TREPR_0903 | TREPR_0900 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | AAA ATPase. | 0.482 |
AEF83673.1 | AEF84507.1 | TREPR_0903 | TREPR_0906 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | Hypothetical protein; Identified by glimmer; putative. | 0.461 |
AEF83673.1 | AEF84963.1 | TREPR_0903 | TREPR_0902 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | 0.807 |
AEF83673.1 | AEF86018.1 | TREPR_0903 | TREPR_0901 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | Putative transcriptional regulator; Identified by match to protein family HMM PF00717. | 0.552 |
AEF83673.1 | AEF86969.1 | TREPR_0903 | TREPR_0904 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | DNA polymerase III, alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.888 |
AEF83946.1 | AEF83673.1 | TREPR_0900 | TREPR_0903 | AAA ATPase. | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | 0.482 |
AEF83946.1 | AEF84963.1 | TREPR_0900 | TREPR_0902 | AAA ATPase. | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | 0.473 |
AEF83946.1 | AEF86018.1 | TREPR_0900 | TREPR_0901 | AAA ATPase. | Putative transcriptional regulator; Identified by match to protein family HMM PF00717. | 0.668 |
AEF83946.1 | AEF86969.1 | TREPR_0900 | TREPR_0904 | AAA ATPase. | DNA polymerase III, alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.484 |
AEF84507.1 | AEF83673.1 | TREPR_0906 | TREPR_0903 | Hypothetical protein; Identified by glimmer; putative. | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | 0.461 |
AEF84507.1 | AEF84963.1 | TREPR_0906 | TREPR_0902 | Hypothetical protein; Identified by glimmer; putative. | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | 0.461 |
AEF84507.1 | AEF86969.1 | TREPR_0906 | TREPR_0904 | Hypothetical protein; Identified by glimmer; putative. | DNA polymerase III, alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.461 |
AEF84963.1 | AEF83673.1 | TREPR_0902 | TREPR_0903 | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | 0.807 |
AEF84963.1 | AEF83946.1 | TREPR_0902 | TREPR_0900 | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | AAA ATPase. | 0.473 |
AEF84963.1 | AEF84507.1 | TREPR_0902 | TREPR_0906 | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | Hypothetical protein; Identified by glimmer; putative. | 0.461 |
AEF84963.1 | AEF86018.1 | TREPR_0902 | TREPR_0901 | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | Putative transcriptional regulator; Identified by match to protein family HMM PF00717. | 0.540 |
AEF84963.1 | AEF86969.1 | TREPR_0902 | TREPR_0904 | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | DNA polymerase III, alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.828 |
AEF86018.1 | AEF83673.1 | TREPR_0901 | TREPR_0903 | Putative transcriptional regulator; Identified by match to protein family HMM PF00717. | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | 0.552 |
AEF86018.1 | AEF83946.1 | TREPR_0901 | TREPR_0900 | Putative transcriptional regulator; Identified by match to protein family HMM PF00717. | AAA ATPase. | 0.668 |
AEF86018.1 | AEF84963.1 | TREPR_0901 | TREPR_0902 | Putative transcriptional regulator; Identified by match to protein family HMM PF00717. | Conserved hypothetical protein; Identified by match to protein family HMM PF01904. | 0.540 |
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