Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEF84637.1Oligopeptide transport ATP-binding protein AppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
AEF86170.1
Glutathione transport system permease protein GsiD; Identified by match to protein family HMM PF00528.
   0.844
AEF83896.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.778
AEF86664.1
Dipeptide transport system permease protein DppC; Identified by match to protein family HMM PF00528.
 
   0.769
AEF85418.1
Probable peptide ABC transporter permease protein y4tP; Identified by match to protein family HMM PF00528.
 
   0.758
AEF83953.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
 
   0.741
AEF86732.1
Glutathione transport system permease protein GsiD; Identified by match to protein family HMM PF00528.
 
   0.726
AEF86349.1
Glutathione transport system permease protein GsiD; Identified by match to protein family HMM PF00528.
 
   0.723
AEF84652.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
 
   0.680
AEF86072.1
Oligopeptide transport system permease protein OppC; Identified by match to protein family HMM PF00528.
   0.675
AEF84947.1
Glutathione transport system permease protein GsiD; Identified by match to protein family HMM PF00528.
 
   0.661
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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