Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEF83763.1Identified by match to protein family HMM PF00005. (249 aa)    
Predicted Functional Partners:
AEF86222.1
L-cystine transport system permease protein TcyB; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
  0.996
AEF85309.1
Extracellular solute-binding protein, family 3; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
  0.991
AEF85998.1
Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
   0.905
AEF86339.1
Glutamine transport ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.
  
  
 
0.904
AEF86115.1
L-cystine transport system permease protein TcyL; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
   0.898
AEF83596.1
L-cystine transport system permease protein TcyB; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
   0.875
AEF84624.1
L-cystine transport system permease protein TcyB; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
   0.874
AEF85037.1
ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528.
 
   0.874
AEF84301.1
ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
   0.874
AEF84998.1
ABC-type amino acid transport system, permease component; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
   0.874
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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