Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEF86545.1AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501. (580 aa)    
Predicted Functional Partners:
AEF86159.1
Identified by match to protein family HMM PF00501.
  
  
 
0.928
AEF83575.1
Long-chain acyl-CoA synthetase; Identified by match to protein family HMM PF00501.
  
  
 
0.917
AEF86874.1
GGDEF/EAL/PAS/PAC domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.773
acd
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
 
 
 0.524
AEF86045.1
Identified by match to protein family HMM PF00485.
   
 
 0.461
AEF86027.1
Identified by match to protein family HMM PF02597.
  
   0.425
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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