Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF83548.1 | AEF86021.1 | TREPR_1187 | TREPR_1189 | Hypothetical protein; Identified by glimmer; putative. | Conserved hypothetical protein. | 0.516 |
AEF83548.1 | AEF86980.1 | TREPR_1187 | TREPR_1186 | Hypothetical protein; Identified by glimmer; putative. | Diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784. | 0.773 |
AEF83548.1 | dapL | TREPR_1187 | TREPR_1185 | Hypothetical protein; Identified by glimmer; putative. | LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.741 |
AEF86021.1 | AEF83548.1 | TREPR_1189 | TREPR_1187 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.516 |
AEF86021.1 | AEF86980.1 | TREPR_1189 | TREPR_1186 | Conserved hypothetical protein. | Diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784. | 0.516 |
AEF86021.1 | dapL | TREPR_1189 | TREPR_1185 | Conserved hypothetical protein. | LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.497 |
AEF86980.1 | AEF83548.1 | TREPR_1186 | TREPR_1187 | Diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
AEF86980.1 | AEF86021.1 | TREPR_1186 | TREPR_1189 | Diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784. | Conserved hypothetical protein. | 0.516 |
AEF86980.1 | dapL | TREPR_1186 | TREPR_1185 | Diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784. | LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.898 |
dapL | AEF83548.1 | TREPR_1185 | TREPR_1187 | LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | Hypothetical protein; Identified by glimmer; putative. | 0.741 |
dapL | AEF86021.1 | TREPR_1185 | TREPR_1189 | LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | Conserved hypothetical protein. | 0.497 |
dapL | AEF86980.1 | TREPR_1185 | TREPR_1186 | LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | Diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784. | 0.898 |