Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF85938.1 | spoVG | TREPR_0840 | TREPR_1208 | Radical SAM; Identified by match to protein family HMM PF04055. | Putative septation protein SpoVG; Could be involved in septation. | 0.451 |
| AEF86378.1 | AEF86433.1 | TREPR_1211 | TREPR_1212 | Probable N-glycosylase/DNA lyase. | Conserved hypothetical protein. | 0.773 |
| AEF86378.1 | AEF86904.1 | TREPR_1211 | TREPR_1210 | Probable N-glycosylase/DNA lyase. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| AEF86378.1 | ispE | TREPR_1211 | TREPR_1209 | Probable N-glycosylase/DNA lyase. | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.567 |
| AEF86378.1 | spoVG | TREPR_1211 | TREPR_1208 | Probable N-glycosylase/DNA lyase. | Putative septation protein SpoVG; Could be involved in septation. | 0.473 |
| AEF86433.1 | AEF86378.1 | TREPR_1212 | TREPR_1211 | Conserved hypothetical protein. | Probable N-glycosylase/DNA lyase. | 0.773 |
| AEF86433.1 | AEF86904.1 | TREPR_1212 | TREPR_1210 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| AEF86433.1 | ispE | TREPR_1212 | TREPR_1209 | Conserved hypothetical protein. | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.592 |
| AEF86433.1 | spoVG | TREPR_1212 | TREPR_1208 | Conserved hypothetical protein. | Putative septation protein SpoVG; Could be involved in septation. | 0.473 |
| AEF86904.1 | AEF86378.1 | TREPR_1210 | TREPR_1211 | Hypothetical protein; Identified by glimmer; putative. | Probable N-glycosylase/DNA lyase. | 0.773 |
| AEF86904.1 | AEF86433.1 | TREPR_1210 | TREPR_1212 | Hypothetical protein; Identified by glimmer; putative. | Conserved hypothetical protein. | 0.773 |
| AEF86904.1 | ispE | TREPR_1210 | TREPR_1209 | Hypothetical protein; Identified by glimmer; putative. | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.567 |
| AEF86904.1 | spoVG | TREPR_1210 | TREPR_1208 | Hypothetical protein; Identified by glimmer; putative. | Putative septation protein SpoVG; Could be involved in septation. | 0.473 |
| ispE | AEF86378.1 | TREPR_1209 | TREPR_1211 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Probable N-glycosylase/DNA lyase. | 0.567 |
| ispE | AEF86433.1 | TREPR_1209 | TREPR_1212 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Conserved hypothetical protein. | 0.592 |
| ispE | AEF86904.1 | TREPR_1209 | TREPR_1210 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Hypothetical protein; Identified by glimmer; putative. | 0.567 |
| ispE | rplY | TREPR_1209 | TREPR_1206 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.523 |
| ispE | spoVG | TREPR_1209 | TREPR_1208 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Putative septation protein SpoVG; Could be involved in septation. | 0.704 |
| rplY | ispE | TREPR_1206 | TREPR_1209 | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.523 |
| rplY | spoVG | TREPR_1206 | TREPR_1208 | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Putative septation protein SpoVG; Could be involved in septation. | 0.525 |
page 1 of 2