Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83898.1 | AEF84390.1 | TREPR_1213 | TREPR_1363 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Conserved hypothetical protein. | 0.495 |
| AEF83898.1 | AEF84598.1 | TREPR_1213 | TREPR_2723 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324. | 0.469 |
| AEF83898.1 | AEF84623.1 | TREPR_1213 | TREPR_3765 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Conserved domain protein; Identified by match to protein family HMM PF00037. | 0.521 |
| AEF83898.1 | AEF85771.1 | TREPR_1213 | TREPR_1214 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Putative membrane protein; Identified by match to protein family HMM PF02588. | 0.570 |
| AEF83898.1 | AEF86378.1 | TREPR_1213 | TREPR_1211 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Probable N-glycosylase/DNA lyase. | 0.488 |
| AEF83898.1 | AEF86433.1 | TREPR_1213 | TREPR_1212 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Conserved hypothetical protein. | 0.507 |
| AEF83898.1 | AEF86904.1 | TREPR_1213 | TREPR_1210 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Hypothetical protein; Identified by glimmer; putative. | 0.488 |
| AEF83898.1 | nifB | TREPR_1213 | TREPR_2883 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Nitrogenase cofactor biosynthesis protein NifB; Identified by match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290. | 0.501 |
| AEF83898.1 | nifJ | TREPR_1213 | TREPR_1990 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.640 |
| AEF83898.1 | rnfB | TREPR_1213 | TREPR_0305 | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.595 |
| AEF84390.1 | AEF83898.1 | TREPR_1363 | TREPR_1213 | Conserved hypothetical protein. | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | 0.495 |
| AEF84598.1 | AEF83898.1 | TREPR_2723 | TREPR_1213 | IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324. | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | 0.469 |
| AEF84598.1 | AEF84623.1 | TREPR_2723 | TREPR_3765 | IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324. | Conserved domain protein; Identified by match to protein family HMM PF00037. | 0.466 |
| AEF84598.1 | nifB | TREPR_2723 | TREPR_2883 | IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324. | Nitrogenase cofactor biosynthesis protein NifB; Identified by match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290. | 0.768 |
| AEF84598.1 | nifJ | TREPR_2723 | TREPR_1990 | IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.674 |
| AEF84598.1 | rnfB | TREPR_2723 | TREPR_0305 | IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.728 |
| AEF84623.1 | AEF83898.1 | TREPR_3765 | TREPR_1213 | Conserved domain protein; Identified by match to protein family HMM PF00037. | 4Fe-4S ferredoxin, iron-sulfur binding domain protein. | 0.521 |
| AEF84623.1 | AEF84598.1 | TREPR_3765 | TREPR_2723 | Conserved domain protein; Identified by match to protein family HMM PF00037. | IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324. | 0.466 |
| AEF84623.1 | nifJ | TREPR_3765 | TREPR_1990 | Conserved domain protein; Identified by match to protein family HMM PF00037. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.699 |
| AEF84623.1 | rnfB | TREPR_3765 | TREPR_0305 | Conserved domain protein; Identified by match to protein family HMM PF00037. | Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.488 |
page 1 of 3