Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF84122.1 | AEF85066.1 | TREPR_1216 | TREPR_1217 | Putative universal stress protein family; Identified by match to protein family HMM PF00582. | Hypothetical protein; Identified by glimmer; putative. | 0.701 |
| AEF84122.1 | AEF85294.1 | TREPR_1216 | TREPR_1220 | Putative universal stress protein family; Identified by match to protein family HMM PF00582. | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | 0.527 |
| AEF84122.1 | AEF86122.1 | TREPR_1216 | TREPR_1218 | Putative universal stress protein family; Identified by match to protein family HMM PF00582. | DnaJ domain protein; Identified by match to protein family HMM PF00226. | 0.741 |
| AEF84122.1 | atpD-2 | TREPR_1216 | TREPR_1215 | Putative universal stress protein family; Identified by match to protein family HMM PF00582. | V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.863 |
| AEF84122.1 | map | TREPR_1216 | TREPR_1219 | Putative universal stress protein family; Identified by match to protein family HMM PF00582. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.746 |
| AEF85066.1 | AEF84122.1 | TREPR_1217 | TREPR_1216 | Hypothetical protein; Identified by glimmer; putative. | Putative universal stress protein family; Identified by match to protein family HMM PF00582. | 0.701 |
| AEF85066.1 | AEF85294.1 | TREPR_1217 | TREPR_1220 | Hypothetical protein; Identified by glimmer; putative. | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | 0.577 |
| AEF85066.1 | AEF86122.1 | TREPR_1217 | TREPR_1218 | Hypothetical protein; Identified by glimmer; putative. | DnaJ domain protein; Identified by match to protein family HMM PF00226. | 0.810 |
| AEF85066.1 | atpD-2 | TREPR_1217 | TREPR_1215 | Hypothetical protein; Identified by glimmer; putative. | V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.701 |
| AEF85066.1 | map | TREPR_1217 | TREPR_1219 | Hypothetical protein; Identified by glimmer; putative. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.796 |
| AEF85294.1 | AEF84122.1 | TREPR_1220 | TREPR_1216 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | Putative universal stress protein family; Identified by match to protein family HMM PF00582. | 0.527 |
| AEF85294.1 | AEF85066.1 | TREPR_1220 | TREPR_1217 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | Hypothetical protein; Identified by glimmer; putative. | 0.577 |
| AEF85294.1 | AEF85699.1 | TREPR_1220 | TREPR_1826 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | Putative AAA ATPase; Identified by match to protein family HMM PF00004. | 0.683 |
| AEF85294.1 | AEF86106.1 | TREPR_1220 | TREPR_0716 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | 0.435 |
| AEF85294.1 | AEF86122.1 | TREPR_1220 | TREPR_1218 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | DnaJ domain protein; Identified by match to protein family HMM PF00226. | 0.595 |
| AEF85294.1 | AEF86529.1 | TREPR_1220 | TREPR_1221 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | Identified by match to protein family HMM PF03102; match to protein family HMM PF08666. | 0.481 |
| AEF85294.1 | atpD-2 | TREPR_1220 | TREPR_1215 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.497 |
| AEF85294.1 | map | TREPR_1220 | TREPR_1219 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.626 |
| AEF85294.1 | rseP | TREPR_1220 | TREPR_2677 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | RIP metalloprotease RseP; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054. | 0.544 |
| AEF85294.1 | truA | TREPR_1220 | TREPR_1940 | Putative serine protease MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037. | tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) (PSU-I); Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.520 |
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