Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ttdAFumarate hydratase; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722. (279 aa)    
Predicted Functional Partners:
fumB
Fumarate hydratase, class I; Identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723.
 0.999
AEF86844.1
Malate dehydrogenase (oxaloacetate-decarboxylating); Identified by match to protein family HMM PF00390; match to protein family HMM PF03949.
 
 
 0.947
AEF85677.1
Citrate synthase domain protein; Identified by match to protein family HMM PF00285.
  
 
 0.919
argH
Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.
    
  0.816
AEF86632.1
Aminotransferase, class I and II; Identified by match to protein family HMM PF00155.
    
  0.800
AEF83830.1
Aspartate aminotransferase; Identified by match to protein family HMM PF00155.
    
  0.800
AEF84155.1
Isocitrate dehydrogenase, NADP-dependent; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00127; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
  
 0.766
citG
Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Identified by match to protein family HMM PF01874; match to protein family HMM PF03802; match to protein family HMM TIGR03124.
       0.745
AEF85683.1
Glycine dehydrogenase (decarboxylating); Identified by match to protein family HMM PF01212; match to protein family HMM PF02347; overlaps another CDS with the same product name.
   
    0.730
AEF83920.1
Conserved hypothetical protein.
       0.669
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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