STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF86084.1Alanine racemase, N- domain protein; Identified by match to protein family HMM PF01168. (377 aa)    
Predicted Functional Partners:
AEF85919.1
D-ornithine aminomutase S component.
 
  
  0.985
AEF84123.1
D-ornithine aminomutase E component; Identified by match to protein family HMM PF02310; match to protein family HMM PF09043.
 
  
  0.983
AEF85071.1
Dihydrodipicolinate reductase.
 
   
 0.879
AEF84390.1
Conserved hypothetical protein.
 
     0.878
AEF86702.1
Pyridoxal-5'-phosphate-dependent protein beta subunit; Identified by match to protein family HMM PF00291.
 
     0.846
AEF85114.1
MutL protein; Identified by match to protein family HMM TIGR01319.
 
     0.836
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
  0.825
argH
Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.
     
  0.800
AEF86757.1
MutL protein; Identified by match to protein family HMM TIGR01319.
 
     0.489
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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