Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83871.1 | AEF86443.1 | TREPR_1572 | TREPR_1569 | Carboxypeptidase; Identified by match to protein family HMM PF02557. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.492 |
| AEF83871.1 | AEF86639.1 | TREPR_1572 | TREPR_1571 | Carboxypeptidase; Identified by match to protein family HMM PF02557. | Conserved hypothetical protein. | 0.693 |
| AEF83871.1 | valS | TREPR_1572 | TREPR_1570 | Carboxypeptidase; Identified by match to protein family HMM PF02557. | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.693 |
| AEF84484.1 | AEF86443.1 | TREPR_1567 | TREPR_1569 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.483 |
| AEF85906.1 | AEF86443.1 | TREPR_0119 | TREPR_1569 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.600 |
| AEF85906.1 | cmk | TREPR_0119 | TREPR_2339 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.401 |
| AEF86443.1 | AEF83871.1 | TREPR_1569 | TREPR_1572 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Carboxypeptidase; Identified by match to protein family HMM PF02557. | 0.492 |
| AEF86443.1 | AEF84484.1 | TREPR_1569 | TREPR_1567 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Hypothetical protein; Identified by glimmer; putative. | 0.483 |
| AEF86443.1 | AEF85906.1 | TREPR_1569 | TREPR_0119 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.600 |
| AEF86443.1 | AEF86639.1 | TREPR_1569 | TREPR_1571 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Conserved hypothetical protein. | 0.543 |
| AEF86443.1 | cmk | TREPR_1569 | TREPR_2339 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.401 |
| AEF86443.1 | valS | TREPR_1569 | TREPR_1570 | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.554 |
| AEF86639.1 | AEF83871.1 | TREPR_1571 | TREPR_1572 | Conserved hypothetical protein. | Carboxypeptidase; Identified by match to protein family HMM PF02557. | 0.693 |
| AEF86639.1 | AEF86443.1 | TREPR_1571 | TREPR_1569 | Conserved hypothetical protein. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.543 |
| AEF86639.1 | valS | TREPR_1571 | TREPR_1570 | Conserved hypothetical protein. | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.790 |
| cmk | AEF85906.1 | TREPR_2339 | TREPR_0119 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.401 |
| cmk | AEF86443.1 | TREPR_2339 | TREPR_1569 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.401 |
| cmk | valS | TREPR_2339 | TREPR_1570 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.769 |
| valS | AEF83871.1 | TREPR_1570 | TREPR_1572 | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | Carboxypeptidase; Identified by match to protein family HMM PF02557. | 0.693 |
| valS | AEF86443.1 | TREPR_1570 | TREPR_1569 | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797. | 0.554 |
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