Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83871.1 | AEF84147.1 | TREPR_1572 | TREPR_1583 | Carboxypeptidase; Identified by match to protein family HMM PF02557. | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | 0.900 |
| AEF83871.1 | AEF86605.1 | TREPR_1572 | TREPR_2214 | Carboxypeptidase; Identified by match to protein family HMM PF02557. | Serine-type D-Ala-D-Ala carboxypeptidase DacC; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family. | 0.917 |
| AEF83917.1 | AEF84147.1 | TREPR_2211 | TREPR_1583 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | 0.719 |
| AEF83917.1 | AEF85321.1 | TREPR_2211 | TREPR_2209 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.746 |
| AEF83917.1 | murC | TREPR_2211 | TREPR_2414 | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.409 |
| AEF84147.1 | AEF83871.1 | TREPR_1583 | TREPR_1572 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Carboxypeptidase; Identified by match to protein family HMM PF02557. | 0.900 |
| AEF84147.1 | AEF83917.1 | TREPR_1583 | TREPR_2211 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | 0.719 |
| AEF84147.1 | AEF85039.1 | TREPR_1583 | TREPR_1582 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Putative NADPH-dependent fmn reductase; Identified by match to protein family HMM PF03358. | 0.762 |
| AEF84147.1 | AEF85321.1 | TREPR_1583 | TREPR_2209 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.750 |
| AEF84147.1 | AEF86605.1 | TREPR_1583 | TREPR_2214 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Serine-type D-Ala-D-Ala carboxypeptidase DacC; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family. | 0.929 |
| AEF84147.1 | AEF86873.1 | TREPR_1583 | TREPR_3007 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01551. | 0.689 |
| AEF84147.1 | mrdA | TREPR_1583 | TREPR_2328 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | 0.794 |
| AEF84147.1 | mrdB | TREPR_1583 | TREPR_2329 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.733 |
| AEF84147.1 | murC | TREPR_1583 | TREPR_2414 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.739 |
| AEF84147.1 | pbpC | TREPR_1583 | TREPR_2523 | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | Penicillin-binding protein 1C; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073. | 0.927 |
| AEF85039.1 | AEF84147.1 | TREPR_1582 | TREPR_1583 | Putative NADPH-dependent fmn reductase; Identified by match to protein family HMM PF03358. | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | 0.762 |
| AEF85321.1 | AEF83917.1 | TREPR_2209 | TREPR_2211 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | 0.746 |
| AEF85321.1 | AEF84147.1 | TREPR_2209 | TREPR_1583 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. | 0.750 |
| AEF85321.1 | mrdA | TREPR_2209 | TREPR_2328 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | 0.926 |
| AEF85321.1 | mrdB | TREPR_2209 | TREPR_2329 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.936 |
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