STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (373 aa)    
Predicted Functional Partners:
ald
Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; Belongs to the AlaDH/PNT family.
  
 
 0.974
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.955
AEF86632.1
Aminotransferase, class I and II; Identified by match to protein family HMM PF00155.
    
 0.825
AEF83688.1
Putative trap dicarboxylate transporter- dctp subunit; Identified by match to protein family HMM PF03480.
       0.773
AEF85991.1
Trap dicarboxylate transporter- dctm subunit; Identified by match to protein family HMM PF04290; match to protein family HMM PF06808; match to protein family HMM TIGR00786.
       0.773
nadD
Nicotinate; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
  
 0.771
recN
DNA repair protein RecN; Identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634.
  
   
 0.721
AEF85160.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150.
 
  
 0.684
AEF86466.1
UDP-N-acetylmuramyl pentapeptide synthase; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245.
   
 0.633
AEF85659.1
Putative phosphomannomutase; Identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.
  
  
 0.611
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.