STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF86030.1Identified by match to protein family HMM PF00571; match to protein family HMM PF03471. (266 aa)    
Predicted Functional Partners:
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.888
AEF86243.1
Identified by match to protein family HMM PF02562.
  
  
 0.860
AEF84071.1
HD domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM PF07698; match to protein family HMM TIGR00277.
       0.818
AEF86990.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
     0.725
AEF84957.1
Conserved plasmid protein; Identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385.
 
     0.508
AEF85522.1
GMP synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.
  
  
 0.485
AEF83617.1
ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
    0.468
AEF86013.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
    0.452
AEF83988.1
Plasmid stabilization system antitoxin protein; Identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384.
       0.433
AEF85588.1
Hypothetical protein; Identified by glimmer; putative.
       0.407
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.