STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF85954.123S rRNA (uracil-5-)-methyltransferase RumA; Identified by match to protein family HMM PF05958; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (415 aa)    
Predicted Functional Partners:
AEF84956.1
Putative lipoprotein.
       0.773
AEF84014.1
Identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.627
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.570
AEF85673.1
Identified by match to protein family HMM PF00561.
  
    0.566
AEF83711.1
DinB family; Identified by match to protein family HMM PF05163.
       0.565
cmk
Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717.
  
    0.563
AEF84984.1
RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.
 
  
 0.527
recN
DNA repair protein RecN; Identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634.
  
  
 0.525
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     0.492
AEF85019.1
tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
 
  
 0.489
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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