STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF86883.1Bacterial extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496. (546 aa)    
Predicted Functional Partners:
AEF83901.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
 
   0.807
AEF83953.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
 
   0.780
AEF86077.1
Putative transporter; Identified by match to protein family HMM PF00496.
  
  
  0.764
AEF84980.1
Putative dipeptidase; Identified by match to protein family HMM PF01244.
 
     0.724
AEF83918.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
   0.696
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
  
 0.695
AEF84979.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
 
   0.677
AEF85194.1
Probable peptide ABC transporter permease protein y4tP; Identified by match to protein family HMM PF00528.
 
   0.670
AEF85260.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
   0.668
AEF86228.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
   0.656
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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