STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF83826.1Transcriptional regulator, XRE family with cupin sensor; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883. (184 aa)    
Predicted Functional Partners:
AEF84773.1
Acyl-coenzyme A synthetase ACSM3; Identified by match to protein family HMM PF00501.
 
 0.981
AEF85631.1
Acyl-coenzyme A synthetase ACSM3; Identified by match to protein family HMM PF00501.
 
 0.929
AEF86535.1
Putative 3-dehydroquinate dehydratase, type 1/shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01487; match to protein family HMM PF01488; match to protein family HMM PF08501.
  
  
 0.785
metG
methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.692
AEF84499.1
Pentaglycine interpeptide bridge formation protein; Identified by match to protein family HMM PF02388.
       0.649
AEF85302.1
Hypothetical protein; Identified by glimmer; putative.
       0.649
AEF85412.1
NAD-dependent deacetylase; Identified by match to protein family HMM PF02146.
  
    0.539
AEF83585.1
NAD-dependent deacetylase; Identified by match to protein family HMM PF02146.
  
    0.539
AEF86027.1
Identified by match to protein family HMM PF02597.
  
  
 0.521
AEF83635.1
Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.512
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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