STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF85984.1Identified by match to protein family HMM PF03747. (267 aa)    
Predicted Functional Partners:
AEF83964.1
Putative UvrD/REP helicase; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
       0.780
AEF86592.1
Hypothetical protein; Identified by glimmer; putative.
       0.780
AEF85247.1
Phage portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
   
 
 0.709
AEF85404.1
Phage portal protein; Identified by match to protein family HMM PF04860.
   
 
 0.709
AEF84943.1
Hypothetical protein; Identified by glimmer; putative.
       0.623
AEF85346.1
Hypothetical protein; Identified by glimmer; putative.
       0.623
AEF85317.1
Helix-turn-helix domain protein; Identified by match to protein family HMM PF01381.
 
   
 0.544
AEF86513.1
Hypothetical protein; Identified by glimmer; putative.
       0.543
AEF87024.1
Identified by match to protein family HMM PF00149.
       0.482
AEF86532.1
PTS system beta-glucoside-specific EIIBCA component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830.
     
 0.456
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.